105 Commits

Author SHA1 Message Date
josh
c1b75ab6a0 skeleton NewtonComputation added, more base logic present
git-svn-id: svn://anubis/gvsu@319 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-06 21:54:19 +00:00
josh
de91797a58 more robust failure logic
git-svn-id: svn://anubis/gvsu@318 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-06 20:23:33 +00:00
josh
226c88774d more robust failure logic
git-svn-id: svn://anubis/gvsu@317 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-06 20:20:35 +00:00
josh
3937191f37 added logic for getting number of cpus
git-svn-id: svn://anubis/gvsu@316 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-06 20:19:17 +00:00
josh
83ae452669 updated
git-svn-id: svn://anubis/gvsu@315 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-06 20:04:20 +00:00
josh
b99939912c gave window a title, generated pixels differently
git-svn-id: svn://anubis/gvsu@314 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-06 20:02:57 +00:00
josh
ec3ac34994 gave window a title, generated pixels differently
git-svn-id: svn://anubis/gvsu@313 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-06 19:10:59 +00:00
josh
9700421226 added Makefile mpi-fractals.cc
git-svn-id: svn://anubis/gvsu@312 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-06 18:58:13 +00:00
josh
1fdd55b5f2 added analysis
git-svn-id: svn://anubis/gvsu@310 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-01 01:10:56 +00:00
josh
42650bec38 updated results
git-svn-id: svn://anubis/gvsu@309 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-01 01:03:08 +00:00
josh
2f9c310fc1 added label() functions
git-svn-id: svn://anubis/gvsu@308 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-01 01:01:33 +00:00
josh
13a9364dee added results file
git-svn-id: svn://anubis/gvsu@307 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-01 00:32:43 +00:00
josh
3adce996f0 changed MPI_Gatherv to MPI_Gather
git-svn-id: svn://anubis/gvsu@306 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-01 00:27:26 +00:00
josh
266af54f7b fixed delete bug
git-svn-id: svn://anubis/gvsu@305 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-01 00:16:48 +00:00
josh
45d41d04ae implemented distributing work using MPI, finding lowest cost node
git-svn-id: svn://anubis/gvsu@304 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-12-01 00:12:01 +00:00
josh
abeca4599d added permutation calculations to maximum-parsimony.cc
git-svn-id: svn://anubis/gvsu@303 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-30 23:49:04 +00:00
josh
85ce8d7ca8 creating PTrees and getting their total counts now working
git-svn-id: svn://anubis/gvsu@302 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-30 22:16:47 +00:00
josh
12a4d54bcc added PTree class
git-svn-id: svn://anubis/gvsu@301 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-30 21:30:31 +00:00
josh
36c3b1e342 pa4 reading input sequences correctly
git-svn-id: svn://anubis/gvsu@300 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-30 20:00:19 +00:00
josh
750c1e2cf3 updated pa4
git-svn-id: svn://anubis/gvsu@299 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-30 19:58:06 +00:00
josh
2e3b5abd0f added ElementSet, Sequence, skeleton maximum-parsimony.cc, updated Makefile
git-svn-id: svn://anubis/gvsu@298 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-30 18:26:53 +00:00
josh
7b61c6fca9 added input sequences
git-svn-id: svn://anubis/gvsu@297 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-29 19:26:30 +00:00
josh
4cb5289fca added initial files from hw4/src
git-svn-id: svn://anubis/gvsu@296 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-29 18:48:19 +00:00
josh
7aeb84bd15 updated practical part
git-svn-id: svn://anubis/gvsu@294 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-29 18:46:18 +00:00
josh
fc106b1705 updated
git-svn-id: svn://anubis/gvsu@257 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 16:13:06 +00:00
josh
5666b02e76 updated to print the recvmatrix afterwards.... duh
git-svn-id: svn://anubis/gvsu@256 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 16:08:47 +00:00
josh
21cfbd35a4 updated
git-svn-id: svn://anubis/gvsu@255 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 16:07:41 +00:00
josh
379c744d3a updated
git-svn-id: svn://anubis/gvsu@254 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 16:05:51 +00:00
josh
1fd0ca3dcc updated
git-svn-id: svn://anubis/gvsu@253 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 16:05:04 +00:00
josh
c44c1f028e all processes print their matrices
git-svn-id: svn://anubis/gvsu@252 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 16:04:17 +00:00
josh
94c42ca5e0 added a recvmatrix
git-svn-id: svn://anubis/gvsu@251 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 16:00:39 +00:00
josh
31d4ee0887 attempt 2 fixed
git-svn-id: svn://anubis/gvsu@250 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 15:58:33 +00:00
josh
520420f548 attempt 2
git-svn-id: svn://anubis/gvsu@249 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 15:58:09 +00:00
josh
ccf6d9f0fe updated
git-svn-id: svn://anubis/gvsu@248 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 03:26:37 +00:00
josh
dff25d6ff0 updated
git-svn-id: svn://anubis/gvsu@247 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 03:25:30 +00:00
josh
cdcad5abb5 added root parameter to MPI_Gatherv()
git-svn-id: svn://anubis/gvsu@246 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 03:25:03 +00:00
josh
43a5b30712 first attempt completed, needs rework to receive multiple columns
git-svn-id: svn://anubis/gvsu@245 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 03:23:55 +00:00
josh
334598ffca updated matrix entries
git-svn-id: svn://anubis/gvsu@244 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 00:11:36 +00:00
josh
ff390e079a added matrix[][] declaration and printing loop
git-svn-id: svn://anubis/gvsu@243 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-23 00:00:43 +00:00
josh
de4d4a9968 added taskAllocate()
git-svn-id: svn://anubis/gvsu@242 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-22 23:35:51 +00:00
josh
9723bbf212 added hw4 src files, copied from hw6
git-svn-id: svn://anubis/gvsu@241 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-22 22:34:12 +00:00
josh
eeed97b8e3 updated hw6 src
git-svn-id: svn://anubis/gvsu@240 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-22 22:33:17 +00:00
josh
756f1a0bba updated hw4, added src directory
git-svn-id: svn://anubis/gvsu@239 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-22 04:24:09 +00:00
josh
22a26b6e03 updated hw4
git-svn-id: svn://anubis/gvsu@238 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-22 04:02:09 +00:00
josh
a68186b5c8 updated hw4
git-svn-id: svn://anubis/gvsu@237 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-21 01:05:53 +00:00
josh
05642c312b updated hw.tex for hw4
git-svn-id: svn://anubis/gvsu@236 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-20 00:56:19 +00:00
josh
a2e2edab4d added hw4 stuff
git-svn-id: svn://anubis/gvsu@235 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-20 00:32:33 +00:00
josh
f904d3ba15 added a basic timing test
git-svn-id: svn://anubis/gvsu@234 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-18 00:22:30 +00:00
josh
c20e18d654 updated mpi-round-trip.cc
git-svn-id: svn://anubis/gvsu@233 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-18 00:15:09 +00:00
josh
b613436557 added hw6/src directory with initial test
git-svn-id: svn://anubis/gvsu@232 45c1a28c-8058-47b2-ae61-ca45b979098e
2008-11-18 00:10:08 +00:00